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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST003808
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGTGGGACAGAGGGAGTATA
miRNA*
TACTTCCTCCGTCCCATAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGGCATAGATTG
TACTTCCTCCGTCCCATAAAA
AACAAATCTAGAATTATATGTGACATATTCTAGTACAACGAACCTGGACGGAGTCACGTCCAATCTA
GGTTTGTTTT
CTGTGGGACAGAGGGAGTATA
TATTTCTTG
dot-bracket secondary structure
......(((.((
(((((((((.((((((((.((
((((((((((((.....(((((((....(((((..........)))))....)))))))....))))
))))))))))
.)))))))).)))))))))))
....)))..
SIMILARITIES
miRBase
osa-MIR1862e
:
0.0004
PMRD
osa-miRf11738-akr
:
0.000000007
microPC
miR816
:
0.0000001
UniProt
no hits
RFAM
MIR1122: 2e-65
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record